PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924986.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 866aa    MW: 95342.8 Da    PI: 5.8326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924986.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06595615526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+f++  G C+ Gd+CkF+H+
  XP_010924986.1 595 YCNFYLM-GRCQQGDSCKFSHD 615
                     6999999.*************7 PP

2zf-CCCH20.21.1e-06649669525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f+  G C++Gd+CkF+H
  XP_010924986.1 649 PCHNFSSKGMCSRGDKCKFSH 669
                     7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.197590617IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6590615IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4591616IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4594615IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4595615IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034619645IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.131619643IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5621644IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892644672IPR000571Zinc finger, CCCH-type
SMARTSM003560.17647671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6648676IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4649670IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MEDLVRSPAP ELQTLNPRME GFSRSPSPAP RRSHLDSASY RTLVRIFSLC LDKSLARPQE  60
SCKDPNSRSD EVPESSCTGK DSIFGRNGDG HVAEEIGPGR KEEEHSGFEG SERGGFEGSE  120
RGGFGGSERS QGSACGNPRF DDSSLNGNIA LREELGHEND TSAELSESLV FEKLQSGGTK  180
DEALHRMEEL GHGNGHDECD RSANDGTREG LFFRDLEHLL HENINSVEQP ANGELLNDMI  240
SDFSGSIDDP NDLVCAEGSQ DGQRRLGHGE LANNELQKDV PLRKSKLADS KNQISCSEQG  300
KNHEPQDENG KIIFSGDELI YSSEELLHGK MRVEGHGERV DDVLAKDMFP DKHMMDDVRD  360
KEIKSVKELG EGLQQEARCC PDSLMECSGS IEMAGPVLAS EDGGDIEEGE IPGELNISDQ  420
DLDLAHEHVV LEHRNLEAGT TYCGSPNKGD TNMTCIDEGM HSRESNYKDD ESAVPIHIAE  480
GDIMHVSGDD RSSETQMKKS YSSGMRVDVK CPAVDPEALG LTGENLEKTT SQNKEKPSNS  540
VAVEARLKRK RGALTEERKA KRKKAKKRKR AQKEREQGVK RLKLQPISKP KTVKYCNFYL  600
MGRCQQGDSC KFSHDTTPLT KSQPCTYFAR DSCLKGDDCP FDHQLSKYPC HNFSSKGMCS  660
RGDKCKFSHK ITTNEASSSM PIISESKSPL TSEKLNLRKQ NTTNSTSIVA CGPPKTTASS  720
TPFPIHRNME GDTIKPPKIP MRIPNGIRFL SFGKGPSDSI SKHQDNLLKE CKILDQQNQE  780
KFLMDGHKND ANDRSSAQKS LLKAHSESKM MSGRAANSAI NPFDNKNLKN NSFSSVPSVA  840
PGSRSLHSEV SDASKILEEF LFSGIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1546563LKRKRGALTEERKAKRKK
2547566KRKRGALTEERKAKRKKAKK
3548569RKRGALTEERKAKRKKAKKRKR
4561582RKKAKKRKRAQKEREQGVKRLK
5564570AKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924983.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010924985.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010924986.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010924987.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010924988.10.0PREDICTED: zinc finger CCCH domain-containing protein 7